Im pretty new to tuning but maybe i can help you out. As far as AFR tuning follow this write up
http://www.hptuners.com/forum/showth...oop+maf+tuning worked awesome for me. Your AFR might be off because you didnt zero out your "Add vs RPM" table in Power Enrichment. Also looking at your IFR table it doenst look like you modified it for your 42.5 looks like it still on your 36 injectors. Multiply that entire table by 1.18. Also go to Airflow and set your "Timer Max" to 51200 because your probably loosing boost because your boost valve is closing. Maxing it out will keep it open and achieve max boost. You also have alot of Torque Management still and i recommend getting rid of some it just makes the car feel so much better. Take a look at my Tune on my 2003 GTP and copy my torque management settings to your tune you will like it much better.