Hey so I think changing abuse mode speed to zero may have done the trick! Was not still fully responsive and I changed all MAF DTC to first time. Still had to give throttle to start and had some surging until it warmed up with giving throttle. I did drive it and it was better about revving higher in drive. Watched the fuel pressure and have 56-57 at idle and it goes to 60 in gear or driving. Also the VE changes got me to run more rich, but I believe still lean on the top end. Did have the jeep going up a hay bale and it did bog down somewhat like before when under a bigger load. Also cannot really blip the throttle and get a good response yet. I logged a good amount of data during this whole thing. Not sure where I can go with having to use throttle on startup and only occasional stalls between shifting reverse to drive.
Also figured out I had changed the abuse mode setting in the transmission to zero and not in the engine abuse mode so thank you for catching that!
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