Set up a histogram to log STFT's into the maf transfer table, or use wbo2 output logged into the maf histgram for your initial tuning.
Make sure if your using wbo2 and logging this in your maf histo, that, your in open loop and adaptive fueling off, and your base fuel table is set to the proper afr's that your shooting for.
If your tuning with STFT's then don't go forced open loop, just log the stft's in the maf histo and apply those to only to about 0v - 2.2v becuase once you've exceeded somewhere around 2 volts you'll be going open loop and you'll need the wbo2 for tuning.
Preferably the best way is to go open loop and only off a wb for all dialing in your maf curve.
The load with failed maf tables are similar to ve tables but not really. and you tune these tables after you've dialed in your maf transfer.
Set up a histogram to log "load" in the load with failed maf tables and input those values directly in after you've filled the histograms.
with these tables tuned correctly, it helps with transient fueling as the tables are taken into account for fueling predictions.
Do this first then worry abuot all your spark timing, etc.. for later when you've mastered the maf curve.
The HP scanner makes tuning a breeze, it's such a powerful tool that I have no clue why others (tuning software manufactures) haven't caught on yet.