Obviously enough,the maf overrides the map sensor stuff, so trying to tune VE with the maf in is impossible.
When in "ve mode", you are going to be using a whole different setup of stuff, and "ltft" revert to a bit of a different situation.
While research into "maf failure mode" aka VE only mode, is fairly limited, I can say that there are issues with it.
First off, LTFT's are never going to be "disabled" in open loop, with or without oxygen sensors. There is a hidden table that adds and subtracts to LTFT using IAT, and possibly something else such as egr functions, IAC adders/subtractions, even things like decel enleanment, and accel enrichment could show up, all coming from hidden tables, or at least hidden to HPT (I and others have many many more tables than what is accessible in HPT).
So in short, you can NOT use LTFT's for any function in VE mode, other than using them as a metric to accurately adjust the VE table in spots you need. So in your tuning, you would be hashing LTFT, commanded afr, and actual afr vs the VE table, instead of just command / actual afr. It is fairly uncharted territory, so you will need to do a bit of trial and error.. But I would suggest that you run without any o2 sensors in hopes of making it as easy as possible.