There are several 0 ed out parameters
AC idle had no entrys
Yours
Attachment 37656 Attachment 37658
Mine
Attachment 37657 Attachment 37659
I can post my tune for you if you wish I have a stock 04.
There were others too , all seem to be associated with idle.
I had a similar event happen where my maf table was 0'ed, had no idea how it got that way. If you plug in my stock values's the car might idle, Bump the numbers as mention earlier.
Im assuming my program isnt causing this, I loaded your file several times.