What have you changed about things like Commanded AFR when NA or FI?
Timing, more? less?
How do you edit the Requested Torque Tables with the new ECU setup?
From the last 4 years I have gotten sort of a process for tuning, doing things in a certain order, some tables get the same/similar initial adjustments, etc.
With the new ECUs and DI motors that I have tuned so far, it seems to be working fine, seeing good results, but I just can't help but feel I might be missing something(s) in my edits.