I already emailed support on this one. The car has a DiabloSport modified PCM that we sent the calibration to HPTuners and they got up up and running to be able to flash new files on.
I'm only posting this here in case anyone runs into a similar issue. Baro Learn is disabled in the calibration, but does not actually disable and while logging, the barometric pressure continues to change. (swinging from 14.2 to 15.3psi, which where I am, is not possible.)
I'll update this post as new information becomes available.