Hi,
Well here's my current tune, please remember my engine is quite a lot different, even if I do have same MAF...
The outside temp does have an effect, and if it's cold it's more critical that the numbers are somewhere near right, but what you are describing is more than some minor inaccuracy!
http://www.vf750.co.uk/imagedump/all_on_128.hpt
Are you sure that there isn't something else? I also don't see how your injectors can be saying they are open a lot (big MS numbers) and duty cycle low at the same time. Even if you are swapping injectors as well as manifold, STILL the numbers are what is commanded, and that is decided by the tune...
If your injectors are swapped with manifold and they are wayyyyy too big, then the fueling will go to hell, but the MS numbers would be same I think, just the big injectors dump much too much fuel for same period opening.
I had assumed you knew, but swapping injectors is a fairly precise business, you need EXACT figures for some tables before you even begin. No trial and error.... However your existing inj. would be fine I would have thought.
kr D.