There is a min throttle angle in the electronic airflow tab but possibly can just lower Decel Max Rate in the Idle -> Torque tab to not have it try to rev down quicker than it's able to catch itself at the target idle RPM. Maybe allowing more torque correction or commanding higher torque will prevent it from trying to close the throttle quite as much as well...
Again these are guesses so if it doesn't work don't think something must be off.