I think I've answered my own questions from research but I'll post here in any case to make sure.
Brother inlaw has a 2009 FG Turbo, just had a 4" dump, free flow cat etc exhaust installed, also has plazmaman intercooler/piping etc that was fitted before issue started.
He's now getting a P1227 fault (Wastegate Failed Closed Over Pressure).
From reading it's due to the free flowing exhaust and the wastegate needing porting, nothing to do with the tune, could this be correct?
We've checked to make sure the actuator is working properly with compressed air (can see arm moving), also inspected all lines etc.
I've pulled the tune and it looks stock from compare files i have put it against.
Am i able to have a fiddle (safely) with maybe the wastegate settings in the tune to overcome the issue (threshold etc)?
Haven't logged it as yet, exhaust was only fitted a few days ago.
I've got plenty of LS experience (tune my LS 6L turbo, know enough to get me into trouble), never played with a ford tune though to date.