How is your speedo in the rig hooked up. I want to make sure the ecm speed is matching the actual. In the log you cruised for a couple minutes at 42 mph. You think that is close?
Here is revised tune. Based on trims i pulled some fuel from the MAF. I also added some timing back in for the cruise area. I also changed some EOI stuff, should help with fuel smell at idle, which i assume it does. Changed some BRAF stuff as idle needs less air and a touch less spark intervention, this might smooth out the idle a bit. If it seems worse tell me.
I did not change anything in the trans so you can just "calibration flash" the ecm and "do not write" the TCM