I probably wouldn't worry too much about hurting it, it's not knocking and you're not tripping any excessive heat limits... Though *I* would trim back the LSPI load limits and put back a few others, just to keep it more "factory" safe.
The only thing that looks out of place to me is OP Enrichment Requirement (ECM 44422) is disabled, it's enabled on all my 2.3L Ecoboost files (Ranger, Mustang, and Focus RS), I don't have any other 3 cylinder examples though.
It is disabled in the V6 applications, but those tend to do things differently for some reason.