You can disabling Cylair anticipation while leaving the Cylair filter enabled. Out side of that its all physical MAF placement and the air stream it is sampling.
You didn't have to change your gear ratios?
Hard to tell if the RPM is showing slip or its just not happy with not getting the gear ratios it is expecting. If it is slipping that can affect what the MAF reports.
1st-2.97 2nd-1.78 3rd-1.30 4th-1.00 5th-0.80 6th-0.63 reverse 2.9 Is what I think the TR6060 gear ratios are suppose to be. During your pulls it seems to be trying to use 1.68(3rd) and 1.28(4th) gear ratios, instead of the proper 2nd and 3rd gear ratios.
I believe this should be 2nd, close to stock 3rd
2nd should be 1.78.PNG
I believe this should be 3rd, close to stock 4th
3rd should be 1.3.PNG
I believe this should be 4th, same as stock 5th, pulls and vehicle speed in this gear it might not matter.
4th.PNG
I believe this should be 5th
5th.PNG
This looks almost like a money shift. RPM shouldn't spike as it did when you are off the gas pedal. Don't need to break it during tuning, granny shift.